dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000001560_1|CGC19
Gene ID: MGYG000001560_01334
Location and strand information: 1593155 - 1597117 (-)
Family: GH78|CBM67
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 4.0969
Protein molecular weight: 147084.59
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001560_1|CGC19
Gene ID: MGYG000001560_01335
Location and strand information: 1597292 - 1598347 (+)
Family: HTH_AraC
Protein type: TF
Protein description: HTH-type transcriptional activator RhaS

Gene clsuter ID: MGYG000001560_1|CGC19
Gene ID: MGYG000001560_01336
Location and strand information: 1598394 - 1599410 (-)
Family: HTH_11+HTH_AraC
Protein type: TF
Protein description: HTH-type transcriptional activator RhaS

Gene clsuter ID: MGYG000001560_1|CGC19
Gene ID: MGYG000001560_01337
Location and strand information: 1599581 - 1603411 (+)
Family: GH106
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 4.088
Protein molecular weight: 140279.82
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000001560_1|CGC19
Gene ID: MGYG000001560_01338
Location and strand information: 1603993 - 1604631 (+)
Family: null
Protein type: null
Protein description: Superoxide dismutase [Mn]

Gene clsuter ID: MGYG000001560_1|CGC19
Gene ID: MGYG000001560_01339
Location and strand information: 1604929 - 1606074 (+)
Family: 3.A.1.12.3
Protein type: TC
Protein description: Choline transport ATP-binding protein OpuBA

Gene clsuter ID: MGYG000001560_1|CGC19
Gene ID: MGYG000001560_01340
Location and strand information: 1606067 - 1607653 (+)
Family: 3.A.1.12.8
Protein type: TC
Protein description: hypothetical protein

Gene clsuter ID: MGYG000001560_1|CGC19
Gene ID: MGYG000001560_01341
Location and strand information: 1607776 - 1611210 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000001560_1|CGC19
Gene ID: MGYG000001560_01342
Location and strand information: 1611419 - 1612426 (+)
Family: HTH_AraC+HTH_AraC
Protein type: TF
Protein description: HTH-type transcriptional activator RhaR

Gene clsuter ID: MGYG000001560_1|CGC19
Gene ID: MGYG000001560_01343
Location and strand information: 1612431 - 1613777 (-)
Family: 2.A.66.1.7
Protein type: TC
Protein description: Multidrug export protein MepA

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CGC gene composition diagram

Gene composition table

Substrate predicted by dbCAN-PUL is pectin download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000001560_01334	hypothetical protein	CAZyme	1593155	1597117	-	GH78\| CBM67
MGYG000001560_01335	HTH-type transcriptional activator RhaS	TF	1597292	1598347	+	HTH_AraC
MGYG000001560_01336	HTH-type transcriptional activator RhaS	TF	1598394	1599410	-	HTH_11+HTH_AraC
MGYG000001560_01337	hypothetical protein	CAZyme	1599581	1603411	+	GH106
MGYG000001560_01338	Superoxide dismutase [Mn]	null	1603993	1604631	+	Sod_Fe_N\| Sod_Fe_C
MGYG000001560_01339	Choline transport ATP-binding protein OpuBA	TC	1604929	1606074	+	3.A.1.12.3
MGYG000001560_01340	hypothetical protein	TC	1606067	1607653	+	3.A.1.12.8
MGYG000001560_01341	hypothetical protein	null	1607776	1611210	-	Glyco_hydro_106
MGYG000001560_01342	HTH-type transcriptional activator RhaR	TF	1611419	1612426	+	HTH_AraC+HTH_AraC
MGYG000001560_01343	Multidrug export protein MepA	TC	1612431	1613777	-	2.A.66.1.7
Protein ID	Protein Name	Type	Start	End	Strand	Signature